Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58601400|gb|CK011928.1|CK011928EST: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
EST:
gi|33684100|gb|CF312339.1|CF312339EST: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGGAGATTCTCCTATATC
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGG-AGATTCTCCTATATC
EST:
gi|33663467|gb|CF294434.1|CF294434EST: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCAATGGTGNTGGGAGATTCTCCTATATC
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTG-TGGGAGATTCTCCTATATC
EST:
gi|11863310|gb|AU065749.2|AU065749EST: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
EST:
gi|29662209|gb|CB658484.1|CB658484EST: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
EST:
gi|4880874|gb|AU065173.1|AU065173EST: GATACTTTGCTATCGGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCCATGGNGTGGGAGAT
genomic: GATACTT-GCTATCGG-CAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGAT
EST:
gi|2310314|gb|C26469.1|C26469EST: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGA-CGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
EST:
gi|163923361|gb|EG711094.1|EG711094EST: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
EST:
gi|33805698|gb|CF328730.1|CF328730EST: ATGATACTTGCTATCTGCAGTATGATCTTCCATGCCACCTTACAGCACGT TTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
genomic: ATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
71 (upstream exon),
71 (downstream exon)
Score:
17CTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCCAATATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTgtaagttttt ... tgttttccagTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACT
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