Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcctctccttcccgggcctcatcttgccctcgaatttttgttcgctcgtcaaactttaggtagcgtacgccgggagatatgtgtggaatttgg...

Basic information

species Oryza sativa
transcript LOC_Os03g49150.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49150.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G832740_T01 (Zea mays), 5'ss of exon 2
TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcctctccttcccgggcctcatcttgccctcgaatttttgttcgctcgtcaaactttaggt-agcgtacgccggg---agatatgtgtggaatttgg
 ||||||| ||||||||||| ||||||||||||||| ||||||||||||||| |       |     | | |  ||| ||     |  | | |  |   | || |||  | | || |  ||  | |   | | ||| ||| ||||   
GCCTTCCAGTGCAAGCACGGCAAGGCGTACCTCTTCCATAAGGTgtaagtgggcctgttgcctttctctttactttgtccc--gttcgtcgatttcaactaaagcttaggatgagggcgcggtgcgctcatagatgggtgtaatta--

upper sequence: LOC_Os03g49150.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G856436_T02 (Zea mays), 5'ss of exon 2
TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcctct--ccttcccgggcctcatcttgccctcgaatttttgttcgctcgtcaaactttaggtagcgtacgccgggagatatgtgtggaatttgg-----
 ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||  |||| |    | | |  |||| |    ||||  |  ||   || |   |    |    || |||    ||||  ||||  |||||||     
GCCTTCCACTGCAGGCACGGGAAGGCGTACCTCTTCCATAAGGTgtaagtggcctcttgcctttct---ctttactttgctcgtcgatttcag--cgaaggttagtttgcgtgcgcggtgcgctcatagatgagtgt--aatttggggaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88208722|gb|CI208571.1|CI208571
EST:     TTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT                         GAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTA
genomic: TTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcc ... cctactctagGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTA