1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcctctccttcccgggcctcatcttgccctcgaatttttgttcgctcgtcaaactttaggtagcgtacgccgggagatatgtgtggaatttgg...
species | Oryza sativa |
transcript | LOC_Os03g49150.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT TGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATEST: gi|218479417|gb|FG947989.1|FG947989
genomic: TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcc ... ttgtgggcagTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAAT
EST: TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT TGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACTGGAATEST: gi|8858378|gb|AU095696.1|AU095696
genomic: TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcc ... ttgtgggcagTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAAT
EST: TCCTTCCATTGCAAGCACGGGAAGGCGGTACCTCTTCAATAAGGT TGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATEST: gi|87013174|gb|CI281688.1|CI281688
genomic: TCCTTCCATTGCAAGCACGGGAAGGC-GTACCTCTTCAATAAGGTgtaagtggcc ... ttgtgggcagTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAAT
EST: CAAGTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT CGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAAT
genomic: CAAGTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcc ... ttgtgggcagTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTgtaagtggcctctccttcccgggcctcatcttgccctcgaatttttgttcgctcgtcaaactttaggtagcgtacgccgggagatatgtgtggaatttgg
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