1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGCGATTACTTTGTCCAATGTCAACTCTGAGGCAGGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagatattgtcatacatgtcatctcctttgttaaatgtgtcacattgttcttacgctctattaaaccaaaccttttctcctcag
species | Oryza sativa |
transcript | LOC_Os03g29260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCTCCAGCAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|58682390|gb|CK071077.1|CK071077
genomic: GCCTCCAG-AAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|3768112|gb|AU032139.1|AU032139
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88402165|gb|CI615008.1|CI615008
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88339571|gb|CI641280.1|CI641280
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88353429|gb|CI631614.1|CI631614
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88363300|gb|CI643158.1|CI643158
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|25799116|gb|CA755077.1|CA755077
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACNTCAGTGG GTACCAGGCTTCANAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|58600756|gb|CK011284.1|CK011284
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88347074|gb|CI631154.1|CI631154
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: TCCAGAAGCTTGATGAGTACCTCCCTTACNTCCGCAGCCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88573347|gb|CI664918.1|CI664918
genomic: TCCAGAAGCTTGATGAGTACCT-CCTTAC-T-CGCAG-CTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88395078|gb|CI609394.1|CI609394
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88584537|gb|CI702099.1|CI702099
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88325561|gb|CI675368.1|CI675368
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|86847825|gb|CI288864.1|CI288864
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88347568|gb|CI630524.1|CI630524
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GCCTCCAGAAGCTTGATGAGTACCTCCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88354486|gb|CI628857.1|CI628857
genomic: GCCTCCAGAAGCTTGATGAGTACCT-CCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88358923|gb|CI619427.1|CI619427
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|218480642|gb|FG944950.1|FG944950
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|55432415|gb|CV729228.1|CV729228
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88383970|gb|CI631860.1|CI631860
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGCEST: gi|88587802|gb|CI705577.1|CI705577
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
EST: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGG GTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
genomic: GGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagata ... ttctcctcagGTACCAGGCTTCAAAGGATGACATGACTGTTTTCACCTCACTTCCTTCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCGATTACTTTGTCCAATGTCAACTCTGAGGCAGGCCTCCAGAAGCTTGATGAGTACCTCCTTACTCGCAGCTACATCAGTGGgtaggagatattgtcatacatgtcatctcctttgttaaatgtgtcacattgttcttacgctctattaaaccaaaccttttctcctcag
- - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT