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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTCCCCCAAATCTTACAAGTGAGGAGTGGACAACTGCATTACCGAGGGCACTAGTTGCAGGTTTTGTTAAGACAGATAAAGAGTTCCAAACAAAAGgtattattctttcactaagctgataacgatttagaggatgtgcatgtaatttagaggcttttagttttctttgttcatattctcccccttttggacaaatatctttctgatttatgaatacatgatcagtgttgttatacacttgcactgcggtgtaaactgattgttaccatgttttcag

Basic information

species Oryza sativa
transcript LOC_Os03g27780.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g27780.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G150213_T04 (Zea mays), 5'ss of exon 2
GCTATTCCCCCAAATCTTACAAGTGAGGAGTGGACAACTGCATTACCGAGGGCACTAGTTGCAGGTTTTGTTAAGACAGATAAAGAGTTCCAAACAAAAGgtattatt------ctttca------ctaagctgataacgatttagaggatgtgcatgtaatttagaggcttttagttttctttgttcata-------ttctcccccttttggacaaatatctttctgatttatgaatacatgatcagtgttgttatacacttgcactgcggtgtaaactgattgttaccatgttttcag
|||||||| |||||||| |||||||||||||||||| |||| || || |||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||        | |||      |    | | |||| ||| | | |      || |      |    |   |  |||    |  ||||       | ||        |||| | |      | | |       ||| || ||  | ||  | | ||  || ||||| | |||||||||| | | |   |||||||||
GCTATTCCTCCAAATCTCACAAGTGAGGAGTGGACAGCTGCGTTGCCAAGGGCACTAGTTGCTGGTTTTGTAAAAACGGATAAAGACTTCCAAACAAAAGgtattataaatgggttgtcagatctgcctgtccgttaaccattcaaaagcaaattatttctcagtggatgtccaatgtttacaggagcatacagcatttgctgtttaccatggatagaggatgattttagcctcctatatatcat-ggagtcctcagactgtttcactgtgatgtaaactgactataa---tgttttcag

upper sequence: LOC_Os03g27780.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G077960_T01 (Zea mays), 5'ss of exon 2
GCTATTCCCCCAAATCTTACAAGTGAGGAGTGGACAACTGCATTACCGAGGGCACTAGTTGCAGGTTTTGTTAAGACAGATAAAGAGTTCCAAACAAAAGgtattattcttt---cactaag-ctgataacgatttagagg---atgtgcatgtaattt----agaggcttttagttttctttgtt-catattc---tcccccttttggacaaatatctttctgatttatgaatacatgatca--gtgttgttatacacttgcactgcggtgtaaactgattgttaccatgttttcag
|||||||| |||||||| |||||||||||||||| | ||||  | || |||||||||||||| |||||||| || ||||||||||| ||||||  ||||||||||||   |      | | | |||       ||||       |   |||  | ||||    |  |  ||  | | |||   |   ||||  |   |  |  |||       ||  | |  || |       || ||   ||  |  |  | | || ||| ||||||| |||||||||| |||||  ||||||||||
GCTATTCCTCCAAATCTCACAAGTGAGGAGTGGAAAGCTGCGCTGCCAAGGGCACTAGTTGCTGGTTTTGTAAAAACAGATAAAGACTTCCAAGGAAAAGgtattataaatgggatgccaggtctgcctgtcttttaaccatccaaaagcaaattatttctcaatggatttgcaatgttcacaggagcatacaccatttgctgtttactgtggattgcatggtgttagcctcctatattgccatgggatcttcagactctttcactgcgatgtaaactgactgttataatgttttcag