1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATTGCAACGGCAAGGAGGTGAGCCTGGAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatacttcgccatcacgatcctgtcctcaccatggtcgtgggtagaattttcttttttctttttttttgggtgtgtgaaaatggtgttcttgactgcgggtatgctttgatttgatctgtaccgggcag
species | Oryza sativa |
transcript | LOC_Os03g24380.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATG TGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACAEST: gi|38565824|gb|CK085277.1|CK085277
genomic: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatactt ... taccgggcagTGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACA
EST: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATG TGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACAEST: gi|29639182|gb|CB644191.1|CB644191
genomic: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatactt ... taccgggcagTGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACA
EST: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATG TGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACAEST: gi|58587054|gb|CF985362.1|CF985362
genomic: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatactt ... taccgggcagTGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACA
EST: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATG TGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACA
genomic: GAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatactt ... taccgggcagTGGGTTCACGGAGACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGCAACGGCAAGGAGGTGAGCCTGGAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatacttcgccatcacgatcctgtcctcaccatggtcgtgggtagaattttcttttttctttttttttgggtgtgtgaaaatggtgttcttgactgcgggtatgctttgatttgatctgtaccgggcag
- - - - - - - - - - - - - GAGATG