1 5' 3' | 2 5' 3' | 3 5' 3' |
GACCTGTCTGAACTCTTTACACCTCTAACTGCTGAAGAGGAAAATGAAGTTCATAATTGTTTGTTTGGTAGGGGTTCAAGgtacctttgatgaccctgctgcatgttgtttgtagcttctatgtttgttgctataacaattgatcatcactcttttgtccttacag
species | Oryza sativa |
transcript | LOC_Os03g22400.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTGAAGAGGAAAATGAAGTTCATAATTGTTTGTTTGGTAGGGGTTCAAG TACTGAAATCCTAGCACTGCATGAGCCCTCCAACATTGAAGTTAGCAGAGAEST: gi|29627373|gb|CB632384.1|CB632384
genomic: GCTGAAGAGGAAAATGAAGTTCATAATTGTTTGTTTGGTAGGGGTTCAAGgtacctttga ... gtccttacagTACTGAAATCCTAGCACTGCATGAGCCCTCCAACATTGAAGTTAGCAGAGA
EST: GCTGAAGAGGAAAATGAAGTTCATAATTGTTTGTTTGGTAGGGGTTCAAG TACTGAAATCCTAGCACTGCATGAGCCCTCCAACATTGAAGTTAGCAGAGA
genomic: GCTGAAGAGGAAAATGAAGTTCATAATTGTTTGTTTGGTAGGGGTTCAAGgtacctttga ... gtccttacagTACTGAAATCCTAGCACTGCATGAGCCCTCCAACATTGAAGTTAGCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTGTCTGAACTCTTTACACCTCTAACTGCTGAAGAGGAAAATGAAGTTCATAATTGTTTGTTTGGTAGGGGTTCAAGgtacctttgatgaccctgctgcatgttgtttgtagcttctatgtttgttgctataacaattgatcatcactcttttgtccttacag
- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - AGAGGA