1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACGAGCAGGCGTTGGTCTCCGCCGCCGCCGCGTATGGTTTCGTGCTAGTTGAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAGgtacagatcgagaccacacccttgttgcgattaaaatttttggcgcttttggtggtgctccactgagattaacagcttgaggaatagggacaaaagaggc...
species | Oryza sativa |
transcript | LOC_Os03g20949.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAG ATTTGATGTTCTTGGACTTCATGAGTTTGACAGCGATCGCAAGAGGATGTCEST: gi|29644799|gb|CB649806.1|CB649806
genomic: GAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAGgtacagatcg ... tcatgtgcagATTTGATGTTCTTGGACTTCATGAGTTTGACAGCGATCGCAAGAGGATGTC
EST: GAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAG ATTTGATGTTCTTGGACTTCATGAGTTTGACAGCGATCGCAAGAGGATGTCEST: gi|29682136|gb|CB678411.1|CB678411
genomic: GAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAGgtacagatcg ... tcatgtgcagATTTGATGTTCTTGGACTTCATGAGTTTGACAGCGATCGCAAGAGGATGTC
EST: GAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAG ATTTGATGTTCTTGGACTTCATGAGTTTGACAGCGATCGCAAGAGGATGTC
genomic: GAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAGgtacagatcg ... tcatgtgcagATTTGATGTTCTTGGACTTCATGAGTTTGACAGCGATCGCAAGAGGATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAGCAGGCGTTGGTCTCCGCCGCCGCCGCGTATGGTTTCGTGCTAGTTGAACGAACCTCCGGGCACATTGTCATTGACGTCCTTGGTGAGAAGCAGAGgtacagatcgagaccacacccttgttgcgattaaaatttttggcgcttttggtggtgctccactgagattaacagcttgaggaatagggacaaaagaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaccc