Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGGCTGGTTACCGGTCAAACTGCACAGTTGAGTGTGGATGCTTCATCCCAGAATGGTCGGACGATCCCTGACAAAATGTTCGGCATCTTTTTTGAGgtgagcttattgttcaactgttggtgcatacattgctttggagtagctgtttcatttttgagccatgtgccataagaagaatgcttcagtaatgccaaag...

Basic information

species Oryza sativa
transcript LOC_Os03g20420.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622779|gb|CB627790.1|CB627790
EST:     CCCAGAATGGTCGGACGATCCCTGACAAAATGTTCGGCATCTTTTTTGAG                         GAGCTCAACCATGCCGGGGCTGGTGGACTGTGGGCAGAGCTTGTAAGCAAC
genomic: CCCAGAATGGTCGGACGATCCCTGACAAAATGTTCGGCATCTTTTTTGAGgtgagcttat ... ttacttgtagGAGCTCAACCATGCCGGGGCTGGTGGACTGTGGGCAGAGCTTGTAAGCAAC
EST: gi|29680537|gb|CB676812.1|CB676812
EST:     CCCAGAATGGTCGGACGATCCCTGACAAAATGTTCGGCATCTTTTTTGAG                         GAGCTCAACCATGCCGGGGCTGGTGGACTGTGGGCAGAGCTTGTAAGCAAC
genomic: CCCAGAATGGTCGGACGATCCCTGACAAAATGTTCGGCATCTTTTTTGAGgtgagcttat ... ttacttgtagGAGCTCAACCATGCCGGGGCTGGTGGACTGTGGGCAGAGCTTGTAAGCAAC