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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatacggctgtattagttgggatattggttttgtcattgctggatgcacagccttttacggtgcgtttgctttgatgtag

Basic information

species Oryza sativa
transcript LOC_Os03g20310.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88425762|gb|CI569349.1|CI569349
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88407487|gb|CI586328.1|CI586328
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|218492876|gb|FG956101.1|FG956101
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88383961|gb|CI631851.1|CI631851
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88352990|gb|CI630168.1|CI630168
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTACCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88345102|gb|CI628356.1|CI628356
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88332679|gb|CI660197.1|CI660197
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|66916817|gb|CX103665.1|CX103665
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88305366|gb|CI630528.1|CI630528
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88345518|gb|CI629779.1|CI629779
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|29658760|gb|CB655035.1|CB655035
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|5803454|gb|AI978424.1|AI978424
EST:     CCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: CCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|58591209|gb|CF989517.1|CF989517
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88449999|gb|CI572130.1|CI572130
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88432234|gb|CI565267.1|CI565267
EST:     ATCCAACGTGTACAGTTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATATCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|29658674|gb|CB654949.1|CB654949
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
EST: gi|88299315|gb|CI572267.1|CI572267
EST:     ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA                         AGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG
genomic: ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAAgtaaggatac ... tttgatgtagAGGTGGCGACTCTGGCATCTCAGTGATCATAGGGCATTTGAAGGTGGCCTG