1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTGCTCAGACTGTTGGGATGGGTGCAGAAGCAGTGAATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGGgtatgttctaatcttttattctacctatacgttttcactcctttacagtacttgttccatgatgctaataagtttacgtactatattccaaaggtgaaaaaaaagattgcatatgctaatgttgttttgacaaatgtag
species | Oryza sativa |
transcript | LOC_Os03g18590.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGG GTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|29678024|gb|CB674299.1|CB674299
genomic: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGGgtatgttcta ... acaaatgtagGTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGG GTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|88403462|gb|CI573185.1|CI573185
genomic: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGGgtatgttcta ... acaaatgtagGTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGG GTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTEST: gi|88762026|gb|CI771582.1|CI771582
genomic: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGGgtatgttcta ... acaaatgtagGTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACT
EST: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGG GTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|25800454|gb|CA756415.1|CA756415
genomic: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGGgtatgttcta ... acaaatgtagGTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGG GTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGGgtatgttcta ... acaaatgtagGTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCTCAGACTGTTGGGATGGGTGCAGAAGCAGTGAATGTTCCTGCAGCTGCCAAACTATTTGATAAGGCAAATGATATACTTGGgtatgttctaatcttttattctacctatacgttttcactcctttacagtacttgttccatgatgctaataagtttacgtactatattccaaaggtgaaaaaaaagattgcatatgctaatgttgttttgacaaatgtag
- - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC