1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGACTGAAGGCCTCGGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctctggttctgagaatttacttctttgttagtttttaatcagtaatttgtaattgtcgagacctgaattggagaatagatggttttagtgtta...
species | Oryza sativa |
transcript | LOC_Os03g18370.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAG GAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGCEST: gi|88433062|gb|CI569731.1|CI569731
genomic: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctc ... ccttatttagGAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
EST: GGAGTTGGAGAGGAGGGGTTGAGCAGAATTGGTGCTTCTTCTGGTTCTAG GAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCAACAGCEST: gi|88385734|gb|CI566596.1|CI566596
genomic: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctc ... ccttatttagGAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
EST: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAG GAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAAC-AAGGTGCACCAGCEST: gi|88311304|gb|CI570378.1|CI570378
genomic: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctc ... ccttatttagGAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
EST: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAG GAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGCEST: gi|88345043|gb|CI625889.1|CI625889
genomic: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctc ... ccttatttagGAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
EST: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAG GAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGCEST: gi|88341081|gb|CI638637.1|CI638637
genomic: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctc ... ccttatttagGAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
EST: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAG GAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGCEST: gi|88387528|gb|CI583046.1|CI583046
genomic: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctc ... ccttatttagGAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
EST: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAG GAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
genomic: GGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctc ... ccttatttagGAACGTTAGAAGACTTCTGCAGACTGGTGGAGTAAACCAAGGTGCACCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGAAGGCCTCGGAGTTGGAGAGGAGGGGTTGAGCAGCATTGGTGCTTCTTCTGGTTCTAGgtgggtgctctggttctgagaatttacttctttgttagtttttaatcagtaatttgtaattgtcgagacctgaattggagaatagatggttttagtgtta
- - - - - - - - - TTGGAG
- - - - - - - - - TGGAGA
- - - - - - - - - - GAGAGG
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - GAGCAG