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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctatccactgattgtactgtcatagttatcttgcttaattttttgggcaacacattgtttccttcataaatgaagaccatgatgctatgatgctctattttacag

Basic information

species Oryza sativa
transcript LOC_Os03g17920.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17920.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G158261_T01 (Zea mays), 5'ss of exon 4
ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat-ccactgattgtact-gtcatagttatcttgctt--aattttttgg-gcaacacattgtttccttca----taaatgaagaccatgatg----ctatgatgctctattttacag---------------------------
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ATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTgtaatttttttcctctcagcaagcttattattgttatattcttcccaatctccaattgcattcgattgtttcctttggttctgtatttattttttaaagaagttcataaaccttaataatatgacaggtacctaagctaactcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88420693|gb|CI564529.1|CI564529
EST:     ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG                         GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC