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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGGTTCAAGGCGGCGGGTATCTACGGCGGTCTGCGCGCCAAGGGCGAGAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggctatcaccaacactttctattcagttcactcgtagtagcagaagtttcttcagagttcagacttcagtttcacttctcgttaccatttctcag...

Basic information

species Oryza sativa
transcript LOC_Os03g17120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 2
AAGGGGTTCAAGGCGGCGGGTATCTACGGCGGTCTGCGCGCCAAGGGCGAGAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggctatcaccaacactttctattcagttcactcgtagtagcagaagtttcttcagagttcagacttcagtttcacttctcgttaccatttctcag
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AAGGGGTTCAAGGCGGCGGGTATCTACAGTGGGTTGCGTGCCAAAGGCGAGAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctccggtttcctattagttgtcgttttggataaggttcgagtcaaacttataaaattttggctacaaataactattttgttatttaattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88412169|gb|CI573445.1|CI573445
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTA
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTA
EST: gi|86901578|gb|CI308559.1|CI308559
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGT
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGT
EST: gi|88433054|gb|CI569723.1|CI569723
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
EST: gi|88358225|gb|CI605150.1|CI605150
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
EST: gi|88720332|gb|CI743631.1|CI743631
EST:     AAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGCTCGCGG                         GAGCTTTTACTACGAATGTTGTTGNTGCTGCACCAGTTTTGTACTGTAAG
genomic: AAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTG-TCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAG
EST: gi|88443537|gb|CI597004.1|CI597004
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
EST: gi|58662721|gb|CK051407.1|CK051407
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACC
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACC
EST: gi|88358912|gb|CI619416.1|CI619416
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGAGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTG
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTG
EST: gi|29613226|gb|CB618239.1|CB618239
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCAACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
EST: gi|88389112|gb|CI595346.1|CI595346
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATG
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATG
EST: gi|88392288|gb|CI612762.1|CI612762
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAATGTTGTTGCTGCTGCACCAGTTTTGTACTGTAAGC
EST: gi|88741107|gb|CI764615.1|CI764615
EST:     GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGG                         GAGCTTTNACTACGAAT
genomic: GAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggcta ... ttcttttcagGAGCTTTTACTACGAAT