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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGGTGAGCGTTTCTGCTTAAATgtaggttttggcatcctaaagtagatctttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g16570.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16570.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G337425_T03 (Zea mays), 5'ss of exon 2
--------------------TGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGGTGAGCGTTTCTGCTTAAATgtaggttttggcatcctaaagtagatctttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag
                    ||||||| |||||||| ||||||||    |||||||||||||| |||||||| |||||||| || |||||||||||||||||||| ||  |||  | |                | ||||  ||   |||| ||||  ||| | ||||| ||||||  || || |   | |||  |  ||
GCAGCGTTTTGTGATCATCATGAGCTTTGTGTTCCGAGGGAGCAGGACCGACATCGAGGCCGGTGGCTTCCCAGGGTTCGCTCCCGAGCGCCGCGCCATGgtgagtgt--ctgtctgag---------------cttaaaccag---ttttcttgtcctga-tgtctga-tcccattcgtttgtgt--gtttgcgtatag

upper sequence: LOC_Os03g16570.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 2
--------------------TGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGGTGAGCGT------------------------TTCTGCTTAAATgtaggttttggcatcctaaagtagatc--tttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag
                    |||||||||||||||| || ||||| |  |||||||||||||| |||||| | ||||||||||| ||||||||| |||||||||| ||                        ||||||| |||||||  |  ||| |   ||   || | |  |||  ||||  ||| | ||||| |||||| ||| || |   |||||  || ||
GCAGCGTCTGGTGGGAACCATGAGCTTCGTGTTCCGAGGAAGCAGGGCCGACATCGAGGCCGGTGGCTTCACAGGGTTCGCCCCCGAGCGCCGCACCATGgtgagtgtctgtctgctcaacccatgatgcatttctgctaaaatgtaactggtggtagtgtagcttaaaccggtttccttgtcctga-tgtctga-tcccatttgtatgtgt--gcttgagtgtag