1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
GTGCGGCGGTGGAGGGGAGGATGTCGTCGCTGAGCCGGGAGCTGGTATTCCTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgtttcaatctaggctgaaaaaaagggtgaaattatcacatgtctgtctagcgtttgtttaactcagttggggttccggcgctgttgttcag
species | Oryza sativa |
transcript | LOC_Os03g14980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|88352344|gb|CI615598.1|CI615598
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|29629469|gb|CB634478.1|CB634478
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTCCTTTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATCAAGTACTTCGAAGACGAEST: gi|88730409|gb|CI754022.1|CI754022
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGACCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAACACGAEST: gi|88337088|gb|CI628174.1|CI628174
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|88724837|gb|CI748096.1|CI748096
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|88298806|gb|CI566003.1|CI566003
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|58662919|gb|CK051605.1|CK051605
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|88343434|gb|CI621802.1|CI621802
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTAATTCGAAGACGAEST: gi|88719564|gb|CI743074.1|CI743074
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|58652923|gb|CK041603.1|CK041603
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGAEST: gi|88412321|gb|CI573597.1|CI573597
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
EST: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAA GCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
genomic: CTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgttt ... tgttgttcagGCTTGAGCAGGAGTCTGGGTTCTACTTCAACATGAAGTACTTCGAAGACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCGGCGGTGGAGGGGAGGATGTCGTCGCTGAGCCGGGAGCTGGTATTCCTCATCCTGCAGTTCCTCGATGAGGAGAAGTTCAAGGAGACTGTTCACAAgtgagtgtttcaatctaggctgaaaaaaagggtgaaattatcacatgtctgtctagcgtttgtttaactcagttggggttccggcgctgttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA