1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCCTATGTCCCTCGTTAGATCCGCCCCTGCCCGGCAATGGGCAGCATGGACACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAGgtaagacacatacgttcttgatgcaatgttgtgctgttcttgcgaattactgcgtttgtgcactaatcgattgatgcgtgatgtcttgtcctttgtgtcag
species | Oryza sativa |
transcript | LOC_Os03g13790.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAG AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGEST: gi|88402222|gb|CI615065.1|CI615065
genomic: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAGgtaagacaca ... tttgtgtcagAATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG
EST: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAG AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGEST: gi|58689184|gb|CK077871.1|CK077871
genomic: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAGgtaagacaca ... tttgtgtcagAATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG
EST: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAG AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGEST: gi|88722844|gb|CI746354.1|CI746354
genomic: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAGgtaagacaca ... tttgtgtcagAATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG
EST: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAG AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGEST: gi|88337044|gb|CI628130.1|CI628130
genomic: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAGgtaagacaca ... tttgtgtcagAATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG
EST: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAG AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG
genomic: CACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAGgtaagacaca ... tttgtgtcagAATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTATGTCCCTCGTTAGATCCGCCCCTGCCCGGCAATGGGCAGCATGGACACGCCAAGAGGAACAAAATTTTTTCAATGCGCTGCGCCAAGTAGGGAAGgtaagacacatacgttcttgatgcaatgttgtgctgttcttgcgaattactgcgtttgtgcactaatcgattgatgcgtgatgtcttgtcctttgtgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA