1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTACGAGGATGGACTCACTGGCGTCGATGACCAGGCGTTTGAGGAATCGTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttctgcttcttgtcacttatgtcaccaataacatttaccaagtacccctgttacgaaatatgctaatatgttatttgaacgtgtactaaaacatgaacatttcttcag
species | Oryza sativa |
transcript | LOC_Os03g13540.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGEST: gi|88397991|gb|CI585494.1|CI585494
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATEST: gi|58593522|gb|CF991830.1|CF991830
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCAT
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGEST: gi|58587652|gb|CF985960.1|CF985960
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGEST: gi|88310928|gb|CI659531.1|CI659531
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCAEST: gi|58685580|gb|CK074267.1|CK074267
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCA
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGEST: gi|117234872|gb|CT847928.1|CT847928
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGEST: gi|58659633|gb|CK048313.1|CK048313
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGEST: gi|58608007|gb|CK036040.1|CK036040
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGEST: gi|87009731|gb|CI310834.1|CI310834
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
EST: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGG TGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
genomic: GTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttc ... atttcttcagTGCTGGGAAATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTACGAGGATGGACTCACTGGCGTCGATGACCAGGCGTTTGAGGAATCGTTTACCGATATCTACACGGCAAAGAGCTTGCAGAAGCCATGGTACCTGGgtaagctttctgcttcttgtcacttatgtcaccaataacatttaccaagtacccctgttacgaaatatgctaatatgttatttgaacgtgtactaaaacatgaacatttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC