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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAGAGAAGGAATTCAAGGTGGAGGTAGAGGCGATCGGCAAGGTGAGGCACAAGCATCTGGTTGGTCTCGTTGGTTACTGCGCGGAAGGGCCCAAACGgtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcagcgatgcaaataatcaatgccatcatcactccgtgctcacag

Basic information

species Oryza sativa
transcript LOC_Os03g12680.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g12680.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G478876_T01 (Zea mays), 5'ss of exon 2
AAGCAGAGAAGGAATTCAAGGTGGAGGTAGAGGCGATCGGCAAGGTGAGGCACAAGCATCTGGTTGGTCTCGTTGGTTACTGCGCGGAAGGGCCCAAACGgtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcagcgatgcaaataatcaatgccatcatcactccgtgctcacag
| || ||||||||||||||||||||||| || || |||||||| |||||||||||||| || || |||||| | || |||||||| ||||| || ||||||| ||      ||| | | ||        || || |||      | |   | |  ||  ||     || |  |        |  ||| |  |    ||||||||| |    || | | ||||||
AGGCCGAGAAGGAATTCAAGGTGGAGGTTGAAGCCATCGGCAAAGTGAGGCACAAGCACCTTGTCGGTCTCATCGGGTACTGCGCAGAAGGCCCTAAACGgtgagcacccacactaacactag-----tgacgaattcaccctgtcagccact--gccaaatgcttaatgctgatagtctgattgatactcactggcaatgccatga---atctgcgttcacag

upper sequence: LOC_Os03g12680.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G043470_T01 (Zea mays), 5'ss of exon 2
AAGCAGAGAAGGAATTCAAGGTGGAGGTAGAGGCGATCGGCAAGGTGAGGCACAAGCATCTGGTTGGTCTCGTTGGTTACTGCGCGGAAGGGCCCAAACGgtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcag--cgatgcaaataatcaatgccatc-atcactccgtgctcacag
| || ||||||||||||||||||||||| || || |||||||| |||||||||||||| || || |||||| | || |||||||| ||||| || ||||||| ||      ||| ||   ||||| | |        ||||    |||   |    ||      ||  |  |   | || | |  |||| |  |    |||||||||| || | || | ||||||||
AGGCCGAGAAGGAATTCAAGGTGGAGGTTGAAGCCATCGGCAAAGTGAGGCACAAGCACCTTGTCGGTCTCATCGGGTACTGCGCAGAAGGTCCAAAACGgtgagcacccacactag---tgaattcac--------ctgaa---taactgtcggccactgccaaatgcttgctgctattctgaccgatacccactggcaatgccatccataaatctgcgctcacag