1 5' 3' | 2 5' 3' | 3 5' 3' |
CAAATGGGCCCTCCTTTGAGTGTTCAAGATTATGATTTTCCGCAGTTAGAGCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgactaattactgtataccctatgtttttgttcatcattttgtggaaaacaagcgtgatgtcattttagttaactgtggagtttctatgtgcatgt...
species | Oryza sativa |
transcript | LOC_Os03g12370.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTCCAGTAEST: gi|29667708|gb|CB663983.1|CB663983
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|88250928|gb|CI248779.1|CI248779
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|27554416|gb|CA998316.1|CA998316
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|89163938|gb|CI101026.1|CI101026
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|88508192|gb|CI435698.1|CI435698
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|87033388|gb|CI188012.1|CI188012
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|88245332|gb|CI245181.1|CI245181
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|12404781|gb|AU166382.1|AU166382
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCNCAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|86828647|gb|CI278720.1|CI278720
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|88961046|gb|CI096449.1|CI096449
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|29671629|gb|CB667904.1|CB667904
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|88366596|gb|CI556380.1|CI556380
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGGTTGTCTGATGGAAGCACAATATAAGTCCAACAATCCTCAATATG GTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|89169618|gb|CI109977.1|CI109977
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCGACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|88996490|gb|CI259994.1|CI259994
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|86413300|gb|CI067705.1|CI067705
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|86594995|gb|CI258249.1|CI258249
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|88206077|gb|CI205926.1|CI205926
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCGGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|86431737|gb|CI085348.1|CI085348
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|86495289|gb|CI137922.1|CI137922
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|86825574|gb|CI361750.1|CI361750
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: TCAGGATTGTCTGATGTAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGATCATACTTGCAGTAEST: gi|88968188|gb|CI098430.1|CI098430
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|86497061|gb|CI139694.1|CI139694
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTAEST: gi|218482494|gb|FG954955.1|FG954955
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
EST: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATG CTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
genomic: GCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgacta ... ttttcatcagCTGATGTCATTACCGAAGCTTGATTGGTGGTCCAGGAGCATACTTGCAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATGGGCCCTCCTTTGAGTGTTCAAGATTATGATTTTCCGCAGTTAGAGCAGGATTGTCTGATGGAAGCACAATATAACTCCAACAATCCTCAATATGgtaatgactaattactgtataccctatgtttttgttcatcattttgtggaaaacaagcgtgatgtcattttagttaactgtggagtttctatgtgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa