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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGgttcgttgccttccgtttcccttgcttggttttgtgacttaggttgtgaaattgatgggggatttggccatttggagcactgctcgataagatcgtgtat...

Basic information

species Oryza sativa
transcript LOC_Os03g11960.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g11960.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G891739_T01 (Zea mays), 5'ss of exon 2
TATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGgttcgttgccttcc--gtttcccttgcttg---gttttgtgacttaggttgtgaaattgatgggggatttggccatttggagcactgctcgataagatcgtgtat
|| |||||||||||||| | |||||| ||| |  |||||||    ||||| ||||||||||||  ||| |||||||| ||||| ||||||||||| |||||||||  ||||||   || |  | || |||    |||||||||||  | |||  ||  |  ||   | |    ||| |  |  | ||      ||  | ||    
TACACCGAGGTGAGGGGCAAGGTCACGGGCTTGACTCCGGGAAGGCATGGATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgccttctttgtgtatcatggttgcttattttgtgacttttgctgtcgaaacg--ggaatactactgcatatataatagtgaatcgcaa--ttgtact-