1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATGTACAAAACCTTGGAGAGGTACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcctcttagtttcttaattaacaatctttgacaaatcaattacttcttactagcagaacatatattatgatttatgagtcagttattcgctta...
species | Oryza sativa |
transcript | LOC_Os03g11614.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATTACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAEST: gi|58684925|gb|CK073612.1|CK073612
genomic: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAAT-ACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCA
EST: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAAEST: gi|58598071|gb|CK008599.1|CK008599
genomic: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
EST: CCGCAGGGTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAAEST: gi|5004673|gb|AU069848.1|AU069848
genomic: CCGCA-GCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
EST: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAAEST: gi|8857332|gb|AU094650.1|AU094650
genomic: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
EST: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAAEST: gi|7378312|gb|AU088583.1|AU088583
genomic: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
EST: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAAEST: gi|2443206|gb|C75937.1|C75937
genomic: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
EST: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAAEST: gi|58602799|gb|CK013327.1|CK013327
genomic: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
EST: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAA ATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
genomic: ACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcc ... tttaaaccagATTAATTACCAAGAATACCTGAAGCTGAAAACAAGAGTTGAATTTCTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTACAAAACCTTGGAGAGGTACCGCAGCTGCAACTACAACTCACAGGATGCAGCAGCTCCAGAAAACGAAgtaagcatcctcttagtttcttaattaacaatctttgacaaatcaattacttcttactagcagaacatatattatgatttatgagtcagttattcgctta
- - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC