1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTATCACTCCAATTGTGACATCTGGCATGGTAATGCAACTTCTAGTGGGATCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtattatgagattaacactatgttctttactattacctgaaccttgaaacttagtgccttatttactatggtctgctgtttgtagcccaccatatttcagcgaatggctattgattaaatgctactacgtatctgattcatgtttaccatgtcttttgattatatttgttacgctaatgtacttttttacccag
species | Oryza sativa |
transcript | LOC_Os03g11440.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAAGCTGEST: gi|58608073|gb|CK036106.1|CK036106
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAA-GCTG
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTEST: gi|58670294|gb|CK058980.1|CK058980
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58673187|gb|CK061873.1|CK061873
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|33795495|gb|CF323617.1|CF323617
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58662553|gb|CK051239.1|CK051239
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGEST: gi|29665156|gb|CB661431.1|CB661431
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTG
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|29616182|gb|CB621194.1|CB621194
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58672408|gb|CK061094.1|CK061094
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|33795682|gb|CF323711.1|CF323711
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58599868|gb|CK010396.1|CK010396
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58691016|gb|CK079703.1|CK079703
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: GTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58688963|gb|CK077650.1|CK077650
genomic: GTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58689769|gb|CK078456.1|CK078456
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTEST: gi|58693311|gb|CK081998.1|CK081998
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
EST: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
genomic: TCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtatta ... ttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCACTCCAATTGTGACATCTGGCATGGTAATGCAACTTCTAGTGGGATCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtattatgagattaacactatgttctttactattacctgaaccttgaaacttagtgccttatttactatggtctgctgtttgtagcccaccatatttcagcgaatggctattgattaaatgctactacgtatctgattcatgtttaccatgtcttttgattatatttgttacgctaatgtacttttttacccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT