Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcaccgcttccttgttcttggccgttgtataattctctgttgtgtttgcgctaagtgtttgctgcctaacccttcctgtgaacgaagggatcta...

Basic information

species Oryza sativa
transcript LOC_Os03g10340.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G703354_T01 (Zea mays), 5'ss of exon 2
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcaccgcttccttgttcttggccgttgtataattctctgt-tgtgtttgcgctaagtgtttgctgcctaacccttcctgtgaacgaagggatcta
||| ||    ||||||||| |||||||||||||||| ||| | || ||||  ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||   ||  ||||  | |  ||||   | |||   ||  ||   | | ||   | |||||  | | ||| ||  |  |    ||    | |  | | |
TCCATTCAGCAAGAAGGACCGGTATGATATCAAGGCTCCGCCAGTCTTCAGCGTGCGCAACATCGGCAAGACCCTGGTGTCCAGGACACAGGGCACCAAGgtatgcctact-cttcgctttgtttgggtatcgtactgttgccttcgtttattatggttaagtagtggttgcttagtcgatttattgttgaacgttaccga

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 2
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcaccgcttccttgttcttgg---ccgttgtataattctctgttgtgtttgcgctaagtgtttgctgcctaacccttcctgtgaacgaagggatcta----
||||||||| ||||| |||||||| |||||||||||||| ||  | ||| | ||   ||| || ||||| |||||||| ||  | || ||||| || ||||| |        ||||  |  | |      || || ||||   |||  |  | |      ||  | | ||  |     |      | |||  ||| || | |     
TCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCTCTTCCAGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttatttttcttctcttatttcaaaatcctttctatatagctcgataatttcattttta--tatatggagttaggc-----gtatgattgaatggttgttgggt

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 2
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcaccgcttccttgttcttggccgttgtataattctctgttgtgtttgcgctaagtgtttgc-tgcctaacccttcctgtgaacgaagggatcta---
||||||||| |||||||||||||| |||||||||||||| || || ||  | ||   |||  | ||||| |||||||| ||  | || ||||| || ||||| |         ||      |||    |  |   |  |||||| |           |   | |||        ||     ||| ||    ||  | | |    
TCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGTCTTTCAGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttt----ttatttttcgtctctcactccataactttttctctatatctcgaaaattttatttttatgcatggaattaggcctctggtttaatagttgttggg

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 5'ss of exon 2
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcaccgcttccttgttcttggccgttgtataattctctgttgtgtttgcgctaagtgtttgctgcctaacccttcctgtgaacgaagggatcta
 ||||| || ||||||||||||||||| |||||||| ||  |  |||||| ||| || ||| | ||||||||||| ||| ||||||| |||||||| ||||  |||||   |   |   |  |    |   |    |   | |||  ||   | | | | |  ||| ||||  ||| |                      
CCCCTTCGCCAAGAAGGACTGGTATGACATCAAGGCGCCCACCATGTTCACTGTCCGCAACGTGGGCAAGACCCTGGTGACCAGGACGCAGGGTACCAAGg--tgagcgagggggcggcgcccgcaccatctccgcaggccgctgcagttgcttcaccatg-atttcctgc--aacgcag--------------------

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S92_47V6.2 (Physcomitrella patens), 5'ss of exon 2
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAA-GACCCTCGTGTCCAGGACACAGGGTACAAAGgt-atgagcaccgcttccttgttcttggccgttgtataattc-tctgttgtgtttgcgctaagtgtttgctgcctaacccttcctgtgaacgaagggatc-ta
||| ||  | |||||||||||||||||||||||||| ||     | ||||  |       | | || || ||| || ||| | |||||    || || ||||| ||   ||    ||   | || ||  ||||| | || ||  | | || | ||  |  | ||  ||| |    | |   ||  ||||      |   || ||
TCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGCACCAAGgttattgccattttttttctatttttt-ccgttttttactttattttttattttatctttgaggattttcga--tgatttttgttgtgtgtctcgcattcgta

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtat-gagcaccgc-ttccttgttcttggccgttgtata---attctctgttgtgtttgcgctaagtgtttgctgcctaaccc-ttcctgtgaacgaagggatcta---------------------------
 |||||  | |||||||||||||||||||||||||| ||       ||||    |  |    | || |||||||| ||  |||| ||   |||||| ||||||| |||    |  ||  || || ||     || | ||     |   ||| |  ||   |||  | |   |||| | |      ||  |  | |||  |    ||                           
CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgagggttgagttttttatttttattttttatttatgggatgggtgtcgctttattgctg-gagcgcgctgtccactttgctcacggaatcgatagctgataaaaggttctacttgatggtcttatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33664975|gb|CF295942.1|CF295942
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|702558|gb|D48849.1|D48849
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|163920115|gb|EG709873.1|EG709873
EST:     CGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: CGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|568501|gb|D39350.1|D39350
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33811313|gb|CF331546.1|CF331546
EST:     ATGTGCGGAACATCGGCAATACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33687117|gb|CF315356.1|CF315356
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58672107|gb|CK060793.1|CK060793
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|218488713|gb|FG953590.1|FG953590
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58599886|gb|CK010414.1|CK010414
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33794046|gb|CF322913.1|CF322913
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|2275899|gb|C24876.1|C24876
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33659524|gb|CF282137.1|CF282137
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|218499634|gb|FG959031.1|FG959031
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|86829565|gb|CI286753.1|CI286753
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58599902|gb|CK010430.1|CK010430
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|88301630|gb|CI597323.1|CI597323
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33693693|gb|CF321932.1|CF321932
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|88311347|gb|CI570421.1|CI570421
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCCTGA
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGC-TGA
EST: gi|38472275|gb|CF956406.1|CF956406
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAGAG                         G
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttag-
EST: gi|38472275|gb|CF956406.1|CF956406
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAGAG                         G
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttag-
EST: gi|58587486|gb|CF985794.1|CF985794
EST:     TGTGCGGAACATCGGCGAGACCCTCGTGTTCAGGACGCGAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: TGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACAC-AGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58677042|gb|CK065729.1|CK065729
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58612772|gb|CK040484.1|CK040484
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGGTGTTTGAGGTCTCCTTAGCTGA
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAG-TGTTTGAGGTCTCCTTAGCTGA
EST: gi|38469895|gb|CF954026.1|CF954026
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTAAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33805842|gb|CF328800.1|CF328800
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58691942|gb|CK080629.1|CK080629
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|27576218|gb|CA998912.1|CA998912
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|55431597|gb|CV728814.1|CV728814
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33817188|gb|CF334429.1|CF334429
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58599812|gb|CK010340.1|CK010340
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33661268|gb|CF292235.1|CF292235
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|29627211|gb|CB632222.1|CB632222
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|44679482|gb|CR292916.1|CR292916
EST:     GGAACATCGGCAAGAACCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: GGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58680509|gb|CK069196.1|CK069196
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58692773|gb|CK081460.1|CK081460
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58596560|gb|CK007088.1|CK007088
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|88300484|gb|CI587288.1|CI587288
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|2280748|gb|C25243.1|C25243
EST:     ATGTGCGGAACATNGGCAAGNCCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|88367420|gb|CI566386.1|CI566386
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|33689922|gb|CF318161.1|CF318161
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|29627212|gb|CB632223.1|CB632223
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|58661504|gb|CK050184.1|CK050184
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|163926487|gb|EG709999.1|EG709999
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|163918509|gb|EG711439.1|EG711439
EST:     CCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: CCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
EST: gi|88394937|gb|CI607664.1|CI607664
EST:     ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAG                         ATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT
genomic: ATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 107

TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcac ... ttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGATCTCCAGAACGATGAGGATCAGGCGTACAGGAAGATCAGACTTCGTGCTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtatgagcaccgcttccttgttcttggccgttgtataattctctgttgtgtttgcgctaagtgtttgctgcctaacccttcctgtgaacgaagggatcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttcc