1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGgtatctgagattctgaaaactctctctctttgtttttcccctatcatcatactctgcttatcaagcttgtcctgcttacgagaattcagttggtgcagct...
species | Oryza sativa |
transcript | LOC_Os03g09140.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTG GGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGEST: gi|33684735|gb|CF312974.1|CF312974
genomic: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGgtatctgaga ... taatgtgcagGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAG
EST: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTG GGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGEST: gi|33688710|gb|CF316949.1|CF316949
genomic: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGgtatctgaga ... taatgtgcagGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAG
EST: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTG GGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGEST: gi|33682508|gb|CF310747.1|CF310747
genomic: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGgtatctgaga ... taatgtgcagGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAG
EST: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTG GGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAG
genomic: CTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGgtatctgaga ... taatgtgcagGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGgtatctgagattctgaaaactctctctctttgtttttcccctatcatcatactctgcttatcaagcttgtcctgcttacgagaattcagttggtgcagct
- - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT