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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGGTTCTGATGCTGTAGCTTATGCCAAGGAAGTCGAAGAACAAATAAATTATGGTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAAgtatgattttttatatgatactttttacataatcgaaagattgtagctttcctcagctttttatctgaaagaacttactgatatggcgatcttgttgatacatgaacatgaatgtag

Basic information

species Oryza sativa
transcript LOC_Os03g07570.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g07570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G124353_T01 (Zea mays), 5'ss of exon 4
TTTCGGTTCTGATGCTGTAGCTTATGCCAAGGAAGTCGAAGAACAAATAAATTATGGTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAAgtatgattttttatatgatactttttaca----------taatcgaaagatt--gtagctttcctcagct--ttttatctgaaagaacttactgatatggcgatcttgttgatacatgaacatgaatgtag
|||||| |||||||||| ||||||||| ||||||||||||||||| |||| |||||| |  || ||||||||||| || |||||||| ||||| |||||||||| |  ||| |   ||   ||| || |          |||| |||| | |  ||| ||||  |           ||   ||| ||||||    | | || ||||||||||||||  | |     |||||
TTTCGGGTCTGATGCTGCAGCTTATGCTAAGGAAGTCGAAGAACACATAACTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactttgaacagaccatttataaaatgctagaactaattgaaataatatgtatcttttgtttataaacccaattcaaaataacttatccttgtcgcaatcttgttgatacaccatctctgctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13896258|gb|AU182594.1|AU182594
EST:     TGCGGGTTTCATTGCTGAAACTTTCCAA                         GGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT
genomic: TGCGGGTTTCATTGCTGAAACTTTCCAAgtatgatttt ... atgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT
EST: gi|84117000|gb|CD150767.1|CD150767
EST:     GTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAA                         GGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTACGCTTA
genomic: GTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAAgtatgatttt ... atgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTA-GCTTA
EST: gi|116875647|gb|EC366155.1|EC366155
EST:     ACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAA                         GGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT
genomic: ACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAAgtatgatttt ... atgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT