1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAGACCAAGCTGCTCCAGCACACGACCACCATATATTTGAATCAACCCATCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGCCAGGAAATCTCAAGgtcaaagatactttgaagtcgatcatgatgtaaattgtaaaacaactcattgatttgcatggaaataattgtttcatatctgaggatgcctgcag
species | Oryza sativa |
transcript | LOC_Os03g07570.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGC-AGGAAATCTCA-G GTGGTGTATTTTGTGAATTCTGG-ACTGAAGCGAATGAATTGGCGATGCTGEST: gi|117224901|gb|CT845968.1|CT845968
genomic: TCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGCCAGGAAATCTCAAGgtcaaagata ... atgcctgcagGTGGTGTATTTTGTGAATTCTGGGACTGAAGCGAATGAACTGGCGATGCTG
EST: TCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGCCAGGAAATCTCAAG GTGGTGTATTTTGTGAATTCTGGAACTGAAGCGAATGAACTGGCGATGCTGEST: gi|29636944|gb|CB641953.1|CB641953
genomic: TCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGCCAGGAAATCTCAAGgtcaaagata ... atgcctgcagGTGGTGTATTTTGTGAATTCTGGGACTGAAGCGAATGAACTGGCGATGCTG
EST: TCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGCCAGGAAATCTCAAG GTGGTGTATTTTGTGAATTCTGGGACTGAAGCGAATGAACTGGCGATGCTG
genomic: TCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGCCAGGAAATCTCAAGgtcaaagata ... atgcctgcagGTGGTGTATTTTGTGAATTCTGGGACTGAAGCGAATGAACTGGCGATGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGACCAAGCTGCTCCAGCACACGACCACCATATATTTGAATCAACCCATCGTCGAGTTTGCAGAAGCGCTCGCGTCCAAGATGCCAGGAAATCTCAAGgtcaaagatactttgaagtcgatcatgatgtaaattgtaaaacaactcattgatttgcatggaaataattgtttcatatctgaggatgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG