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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGCCCTACGTGCTCCTGCGGCGCCCCGATGGCGGCATCTCCACCGAAGATGTGCATGAGGCCATCCCTCTGGATGGGCACTTTATGCGGTATAAATGgtgagttagctcacatctgaaccttcaaatgattcaaatttcctagtcttgtagaaatgtttacttaattgaagttgcaaatgactatagattcgtttta...

Basic information

species Oryza sativa
transcript LOC_Os03g07080.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g07080.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G124051_T01 (Zea mays), 5'ss of exon 2
TCACGCCCTACGTGCTCCTGCGGCGCCCCGATGGCGGCATCTCCACCGAAGATGTGCATGAGGCCATCCCTCTGGATGGGCACTTTATGCGGTATAAATGgtgagttagctcacatctgaaccttcaaatgattcaaatttcctagtcttgtagaaatgtttacttaattgaagttgcaaatgactata-gattcgtttta----
||||||| || |||||||||||||||||||| || ||| ||| |||||| || |||  |||| ||   ||  |||||||| |||| ||||| || || |||||||  ||  ||  || || ||| |   |  |||     ||  | ||       ||| | || | ||   |   ||       | ||  || | | | |     
TCACGCCGTATGTGCTCCTGCGGCGCCCCGACGGAGGCGTCTTCACCGACGACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagc-agtccat-tccgagcct-cttttatttcgtcagtcacaatc--aggacaatttatagtcaaccaagcatggtttcatccattcgagttgctatttgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29639219|gb|CB644228.1|CB644228
EST:     GATGTGCATGAGGCCATCCCTCTGGATGGGCACTTTATGCGGTATAAATG                         GTACCGCATACAAAGTGATCGAAGAGTCGCTGTCTGCAATGTTCATCCAAC
genomic: GATGTGCATGAGGCCATCCCTCTGGATGGGCACTTTATGCGGTATAAATGgtgagttagc ... ccttataaagGTACCGCATACAAAGTGATCGAAGAGTCGCTGTCTGCAATGTTCATCCAAC
EST: gi|29644079|gb|CB649086.1|CB649086
EST:     GATGTGCATGAGGCCATCCCTCTGGATGGGCACTTTATGCGGTATAAATG                         GTACCGCATACAAAGTGATCGAAGAGTCGCTGTCTGCAATGTTCATCCAAC
genomic: GATGTGCATGAGGCCATCCCTCTGGATGGGCACTTTATGCGGTATAAATGgtgagttagc ... ccttataaagGTACCGCATACAAAGTGATCGAAGAGTCGCTGTCTGCAATGTTCATCCAAC