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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAACATCGTGTACCAGTTCCGCAAGGCGCAGAACGAGATCGACAACTACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGgtcggtaaaaccatatccctttcagcttctctcatcagtgttcatttgtttaatcgtgtagttgagtgttagactagtagcctgggcatgtaggctttta...

Basic information

species Oryza sativa
transcript LOC_Os03g06120.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g06120.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G027821_T01 (Zea mays), 5'ss of exon 2
CTGGAACATCGTGTACCAGTTCCGCAAGGCGCAGAACGAGATCGACAACTACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGgtcggtaa--aaccatatccctttcagcttctctcatcag--tgttcatttg---tttaatcgtgtagttgagtgttagactagtagcctgggcatgtaggctttta
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |  ||||||||||    |  |   |  |    ||| |||   ||   ||||  |||    | |  ||  | | | | ||   || ||  ||| ||||  |||| ||| ||  
CTGGAACATCGTCTACCAGTTCCGCAAGGCGCAGAGCGAGATCGACAATTACCTCCGCCTCGTCCCGCTCATCACGCTCGTCGACAATGCCCGCATTCGGgtcggtaatcggctttcatctctctcccttttctacccaagctgtttgtttacattcttctcacgcattcgggt---aggctcctagactgg--atgtgggcctt--

upper sequence: LOC_Os03g06120.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G800359_T01 (Zea mays), 5'ss of exon 1
CTGGAACATCGTGTACCAGTTCCGCAAGGCGCAGAACGAGATCGACAACTACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGgtcggtaa--aaccatatccctttcagcttctctcatcag--tgttcatttg---tttaatcgtgtagttgagtgttagactagtagcctgggcatgtaggctttta
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||| |  ||||||||||    |  |   |  |    ||| |||   ||   ||||  |||    | |  ||    | | | ||   || ||  ||| ||||  |||| ||| ||  
CTGGAACATCGTCTACCAGTTCCGCAAGGCGCAGAGCGAGATCGACAATTACCTCCGCCTCGTCCTGCTCATCACGCTCGTCGACAATGCCCGCATTCGGgtcggtaaccggctttcatctctctcccttttctacccaagctgtttgtttacattcttctcacacattcgggt---aggctcctagactgg--atgtgggcctt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58603148|gb|CK013676.1|CK013676
EST:     ACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGG                         GAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGAT
genomic: ACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGgtcggtaaaa ... tttttttcagGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGAT
EST: gi|27554129|gb|CA998029.1|CA998029
EST:     ACCTCCGCCTCGTCCCGCTCATCACCCTCGTGGACAACGCCCGCGTCAGG                         GAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGAT
genomic: ACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGgtcggtaaaa ... tttttttcagGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGAT