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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCACTAGCAGTGCTTGGTGAGAAAACAACACTAATGTCCCCAGAGGTCCTTATAGACAATGgtgtgccctgctgtaggtacaagttctgaaaccgtcagcaatcaatacaccaatcttaattaatttatgtgttgacatgcattgtatttcag

Basic information

species Oryza sativa
transcript LOC_Os03g05680.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g05680.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AC149475.2_FGT005 (Zea mays), 5'ss of exon 1
--CGTCACTAGCAGTGCTTGGTGAGAAAACAACACTAATGTCCCCAGAGGTCCTTATAGACAATGgtgtgccctgctgtaggtacaagttctgaaaccgtcagcaatcaatacaccaatcttaattaatttatgtgttgacatgcattgtatttcag-----------------------------------------------------------
   || | | |      | | |  | |   ||| || |   ||   |   |  |  |     ||| |  ||| | ||| | ||    ||| ||     |   |   || ||| |    | ||  |||||  | |      |       ||  ||  |                                                           
GAAGTTATTCGTGTACATGGATATGGAGGAAACCCTGACCGCCTTGGTATTTGTCCTTTCTCATGCT-CGCCGT-CTGAATGTTTCGGTTGTGGTCTAGCAGgt--tccataaatttgtattg-ttaatccacgcagcatcgctggcagtgcttggggagaagacaacattgatgtctccagatgttcttgtagcccgtggtgtgccctgctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88225196|gb|CI225112.1|CI225112
EST:     GCTTGGTGAGAAAACAACACTAATGTCCCCAGAGGTCCTTATAGACAATG                         ATTGGTGCAATATCCTGGTGAGTTTGTGGTGACATTCCCAAGGGCTTACCA
genomic: GCTTGGTGAGAAAACAACACTAATGTCCCCAGAGGTCCTTATAGACAATGgtgtgccctg ... tgtatttcagATTGGTGCAATATCCTGGTGAGTTTGTGGTGACATTCCCAAGGGCTTACCA