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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACACCgtgagtaggcgtggtggtgcttgatctcaaatatcaaatatgtgtcctcccgttttcgtgcagtcgatctaacaccgttgtttcttgctaattcgttttc...

Basic information

species Oryza sativa
transcript LOC_Os03g05390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g05390.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G028521_T04 (Zea mays), 5'ss of exon 2
GATACACCGTgagtaggcgtggtggtgcttgatctcaaatat-----caaatatgtgtcctcccgttttcgtgcagtcgatctaacaccgttgtttcttgctaattcgttttc
||||||||||||||||||||| |||||||||||  |   | |     ||  |   ||      |||||| ||      |||| |  |||       |||| |  ||| || | 
GATACACCGTgagtaggcgtgatggtgcttgataccccgttttcgtgcagcttgttgctaattcgttttagtttgagggatcaagaaccac-----cttgttctttctttctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88973492|gb|CI717920.1|CI717920
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88670150|gb|CI724266.1|CI724266
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88673593|gb|CI727706.1|CI727706
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|58666157|gb|CK054843.1|CK054843
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88670805|gb|CI724921.1|CI724921
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88416015|gb|CI594127.1|CI594127
EST:     TGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88972840|gb|CI717566.1|CI717566
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|58665102|gb|CK053788.1|CK053788
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|87009766|gb|CI310869.1|CI310869
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88695197|gb|CI739235.1|CI739235
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88362212|gb|CI608603.1|CI608603
EST:     CGCCCCTACTCCGA-G-------
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88671208|gb|CI723128.1|CI723128
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88594485|gb|CI714443.1|CI714443
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC