1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgttttttactccgtacatgtttatttgtgaaaatggtgttctcctgttgatttgtcaatattttttaatgttggaaagcagctgcctttgcct...
species | Oryza sativa |
transcript | LOC_Os03g05280.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCGGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|86592468|gb|CI253149.1|CI253149
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|58592544|gb|CF990852.1|CF990852
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|33691502|gb|CF319741.1|CF319741
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: TGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|86910401|gb|CI293056.1|CI293056
genomic: TGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|33693314|gb|CF321553.1|CF321553
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|88401815|gb|CI591142.1|CI591142
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAAAAATATGGGACACTG CTGGCCAGGAAAAGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|88401813|gb|CI591140.1|CI591140
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCAGGAAAAGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCEST: gi|88451481|gb|CI565534.1|CI565534
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
EST: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTG CTGGCCAGGAAAAGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
genomic: ATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgtt ... ttgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGgtaagttgttttttactccgtacatgtttatttgtgaaaatggtgttctcctgttgatttgtcaatattttttaatgttggaaagcagctgcctttgcct
- - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGC