1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAGATCCAGCTGCAAATTCACCAACGACCACCTCAGAATCCACAACAGGTTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTGgtaagttttgtgtactttgttttttattttggtgtatgttttcttgtcctgttttggtatcctagattcgcagatgggattctctctgactaatacgtaaatcaacag
species | Oryza sativa |
transcript | LOC_Os03g03920.5 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTG CTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGAEST: gi|58663981|gb|CK052667.1|CK052667
genomic: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTGgtaagttttg ... aaatcaacagCTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGA
EST: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTG CTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGAEST: gi|58598496|gb|CK009024.1|CK009024
genomic: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTGgtaagttttg ... aaatcaacagCTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGA
EST: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTG CTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGAEST: gi|29674369|gb|CB670644.1|CB670644
genomic: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTGgtaagttttg ... aaatcaacagCTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGA
EST: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTG CTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGAEST: gi|13420872|gb|AU174962.1|AU174962
genomic: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTGgtaagttttg ... aaatcaacagCTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGA
EST: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTG CTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGA
genomic: TTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTGgtaagttttg ... aaatcaacagCTGGAGCTGCACAGGGAGCAACAAGGCCCTCTCCAGTTACCAATGCAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATCCAGCTGCAAATTCACCAACGACCACCTCAGAATCCACAACAGGTTCTCCTGCTCCAAACACTAATCCACTTCCAAATCCCTGGAGCACAACTGgtaagttttgtgtactttgttttttattttggtgtatgttttcttgtcctgttttggtatcctagattcgcagatgggattctctctgactaatacgtaaatcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA