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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGCGGCGAGATCCCGGTCACGGAAATGTTCGGCACCTTCGCGCTATCGGTGGGCGCCGCGgtaagcgcacacacacgcaccgtccgcacgacgccgcgcgtcgctcgtgtaaccgtgttggttttgccttgccattttgcgcag

Basic information

species Oryza sativa
transcript LOC_Os03g03370.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03370.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G382534_T01 (Zea mays), 5'ss of exon 2
GGCAGCGGCGAGATCCCGGTCACGGAAATGTTCGGCACCTTCGCGCTATCGGTGGGCGCCGCGgtaagcgcacacacacgcaccgtccgcacgacgccgcgcgtcgc-tcgtgtaaccgtgt-tggttt--tgccttgccattttgcgcag-------------------------------
||| |||||| ||||||||| ||||| ||| ||||||| |||||||| ||||||||||||||||| ||  | | ||| ||  |    |   |  ||   |||| ||  | |||    | ||  ||| |   ||  | |   | | |||| |                               
GGCGGCGGCGCGATCCCGGTGACGGAGATGGTCGGCACGTTCGCGCTCTCGGTGGGCGCCGCGgtgagttcgcccactcgtcctcggcatgccgcgggccgcgccgtgtggtgggttcatggatggatggatggatcgatctgtggcgcggactgacgtgttggtgggtggtttgcgtgcag