1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTGCTGCCTCGCGCTCTGGTGgtaagcgatcctcgtcgatctccccggctccatttttttttaccccgacctgatatattcgacgccccccttttcttctagatctgggcgaatctgtctt...
species | Oryza sativa |
transcript | LOC_Os03g03180.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATATTGCTGCCTCGCGCTCTGGTG TGGACCATGTGTGTCATACATGCTTCGCAAAAGGGCTCTGTATAATGACATEST: gi|58602683|gb|CK013211.1|CK013211
genomic: CATATTGCTGCCTCGCGCTCTGGTGgtaagcgatc ... ttctgttcagTGGACCATGTGTGTCATACATGCTTCGCAAAAGGGCTCTGTATAATGACAT
EST: CATATTGCTGCCTCGCGCTCTGGTG TGGACCATGTGTGTCATACATGCTTCGCAAAAGGGCTCTGTATAATGACATEST: gi|2310999|gb|C27154.1|C27154
genomic: CATATTGCTGCCTCGCGCTCTGGTGgtaagcgatc ... ttctgttcagTGGACCATGTGTGTCATACATGCTTCGCAAAAGGGCTCTGTATAATGACAT
EST: CATATTGCTGCCTCGCGCTCTGGTG TGGACCATGTGTGTCATACATGCTTCG-AAAAGGGCTCTGTATAATGACAT
genomic: CATATTGCTGCCTCGCGCTCTGGTGgtaagcgatc ... ttctgttcagTGGACCATGTGTGTCATACATGCTTCGCAAAAGGGCTCTGTATAATGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCTGCCTCGCGCTCTGGTGgtaagcgatcctcgtcgatctccccggctccatttttttttaccccgacctgatatattcgacgccccccttttcttctagatctgggcgaatctgtctt
- TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccct