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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAGgtgagcatacttttgcactttgccactgcttcattgatacatgctagctttttcggaacttcagtttatgattttggactggtttgtttcag

Basic information

species Oryza sativa
transcript LOC_Os03g02850.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 3
GTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAGgtgagcatacttttgcact-ttgccactgcttcattgatacatgctagctttttcggaacttcagtttatgattttggactggtttgtttcag--
|||||||| ||||||||||| || || || || ||||| |||||||| || |||||||||||||||||  | |||||  ||||||| || |||||||   | ||||      |  || | |||   |  | |  | |   |  || ||        |  |||    ||  ||  ||    ||    
GTCCAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgtcgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcgatgtgaatgctctatttctgctcgcag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
GTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAGgtgagcatacttttgcact-ttgccactgcttcattgatacatgctagctttttcggaacttcagtttatgattttggactggtttgtttcag--
||| |||| ||||||||||| || || || || ||||| |||||||| || |||||||||||||||||  | |||||  |||||||||| |||||||   | ||||  |   |  || | |||   |  | |  | |   |  || ||        |  |||    ||  ||  |     |||   
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G171469_T02 (Zea mays), 5'ss of exon 2
GTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAGgtgagcatacttttgcactttgccactgcttcattgata--catgcta-----gctttttcggaacttcagtttatgattt----tggactggtttgtttcag-----
|||||| |||| |||||||| ||  | || |||||||| || ||||| || |||||||||||||||||| | ||| | ||||| ||||| ||||||   | |   |   ||  ||  |||||  |   ||  | |  ||      | ||       || ||  | ||||| |    || |||||| | | |        
GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcattgccgttgttacccgatgcttactcagtagccgtagtacatgtacattccatattctccatgtcatgatctgtggtgaactggtgtctatgtatgcag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S237_67V6.1 (Physcomitrella patens), 5'ss of exon 2
GTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAGgtgagcatact-----tttgcactttgccactgcttcattgatacatgctagctttttcgga---acttcagtttatgattttggactggtttgtttcag---------------
|| ||| ||||  | || |||   ||||| || |||||||| ||||| || ||||| || |||||| |  ||||||||||||| |||||||||||| ||  |     |      |  | | ||  ||  ||| |   |   | |  |||| ||   | |||    |    || |||  |  ||| ||                   
GTGCAACTGATACGGATAGAACTGAGAGTTCCGGAGTACGGGTGGACTACTCAGAAAGTCTTCCATCTGTTGAACTTTATTGTAAATGGAGgtgagaattgtggaaatcgattttcagtccctttttttttgttttttttaatccatttctgatttatttcgtcctgatcttctggggtcttttattgtgttgtgttgtgttgcag