1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGAGATTGGAAGAACGGCAATAGCGGCAGTAAGTAAAGCAAGGGGAATGGAGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcaccattcactcaatgcgccatttcccttgtaattaggctgtctccctgctgcaatagctgcttgttctttgtctcttacagtttataaatgccggcattgttcttctag
species | Oryza sativa |
transcript | LOC_Os03g02690.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAEST: gi|58672859|gb|CK061545.1|CK061545
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
EST: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAEST: gi|27546884|gb|CA764989.2|CA764989
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
EST: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAEST: gi|58606567|gb|CK034600.1|CK034600
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
EST: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG ATAAGTGGCATGGAAGAAGCCNCTGGAAATTCCGGTGCTCAATGATCTCACEST: gi|29684781|gb|CB681056.1|CB681056
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCC-CTGGAAATTCCGGTGCTCAATGATCTCAC
EST: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATTGGAAGAACGGCAATAGCGGCAGTAAGTAAAGCAAGGGGAATGGAGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcaccattcactcaatgcgccatttcccttgtaattaggctgtctccctgctgcaatagctgcttgttctttgtctcttacagtttataaatgccggcattgttcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA