1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACCCCAGATACTTTGGACCCTATCATTGTTGCAAAGTTGCGAGCAGCTGCAGGATTAGCCTACTTGGCAACAAAGAAGTACAAACTTGCGGCCCGTAAGgttagtcctctaaccccctatgttacttaccttttccgtaaggttatcaaagcagtaatatgaggcaaggtgcggctctagcatcccttgcatctgcact...
species | Oryza sativa |
transcript | LOC_Os03g02540.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGATTAGCCTACTTGGCAACAAAGAAGTACAAACTTGCGGCCCGTAAG TTTGTTGAGACAGGACATGAACTAGGAAACAATTATTCTGAAGTCATGGCTEST: gi|163918537|gb|EG714347.1|EG714347
genomic: CAGGATTAGCCTACTTGGCAACAAAGAAGTACAAACTTGCGGCCCGTAAGgttagtcctc ... tcccttaaagTTTGTTGAGACAGGACATGAACTAGGAAACAATTATTCTGAAGTCATAGCT
EST: CAGGATTAGCCTACTTGGCAACAAAGAAGTACAAACTTGCGGCCCGTAAG TTTGTTGAGACAGGACATGAACTAGGAAACAATTATTCTGAAGTCATAGCT
genomic: CAGGATTAGCCTACTTGGCAACAAAGAAGTACAAACTTGCGGCCCGTAAGgttagtcctc ... tcccttaaagTTTGTTGAGACAGGACATGAACTAGGAAACAATTATTCTGAAGTCATAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCCCAGATACTTTGGACCCTATCATTGTTGCAAAGTTGCGAGCAGCTGCAGGATTAGCCTACTTGGCAACAAAGAAGTACAAACTTGCGGCCCGTAAGgttagtcctctaaccccctatgttacttaccttttccgtaaggttatcaaagcagtaatatgaggcaaggtgcggctctagcatcccttgcatctgcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcgg