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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAAAGAGACTGTCACATACAGCATTTCTGTCAGCGTGCTTGAGGTCTACAATGAGCAAATCAGAGACCTGCTTGCATCATCCCCTTCGTCTAAGAAgtatgaccgtttcttttaggatctgtgctgggttccataatattgccatcctgtgataacttgtaatcttggtattttag

Basic information

species Oryza sativa
transcript LOC_Os03g02290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 8
---AGAGAAAAGAGACTGTCACATACAGCATTTCTGTCAGCGTGCTTGAGGTCTACAATGAGCAAATCAGAGACCTGCTTGCATCATCCCCTTCGTCTAAGAAgtatgaccgtttctttt-aggatctgtgctgggttccataatattgccatcctgtgataacttgtaatcttggtattttag----
   |||| ||||| |  ||||||||   | | ||||| ||||| |||||||| |||||||| |||||||||||||| |||||  | || |   | ||||| |||||  |    || | || |||  |||   |    |   || || |   | |  ||| |||||    ||    || ||  |     
AGGAGAGGAAAGAAAGCGTCACATATGACTTATCTGTTAGCGTTCTTGAGGTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTC---CATCTAAAAAgtacaaaaaattatcttcaggtcctgattttttgtttgtagtagtaggagctcgtgttaactcaacattcacgttttgcatttag

upper sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv18s0001g07800.t01 (Vitis vinifera), 5'ss of exon 8
AGAGAAAAGAGACTGTCACATACAGCATTTCTGTCAGCGTGCTTGAGGTCTACAATGAGCAAATCAGAGACCTGCTTGCATCATCCCCTTCGTCTAAGAAgtatgaccgtttcttttaggatctgtgctgggttccataatattgccatcctgtgataacttgtaatcttgg----tattttag-------------------------------------------------------------------------------------------------------------------
| || ||||| | | | | ||| |  || ||||| ||||||||||| |||||||||||||||||||| |||||||||||  | || ||  | || ||||||||  |   ||  ||     || |   | |  |||  |   |   | |    |  ||   || | | ||  |    |||||| |                                                                                                                   
AAAGGAAAGAAATTTTTAAATATACAATATCTGTTAGCGTGCTTGAAGTCTACAATGAGCAAATCAGGGACCTGCTTGCCACTTCGCCAACATCAAAGAAgtaaaattattatttactc-atattctcagcattcttttgaaaaacaaaggggaaattttttttcaactgagacactatttttgttcttagccaatgaatttgacttggttaaataatcataaaaatgccttcatgttattggctcattttgactagccaacaaactgtcaattgaatttgaatttctttcaatgttag