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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGATGGATCGGCTCCCTTATTTGTTCCTCTTTTTGATGTCCATGATGACTAGACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattcccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccag

Basic information

species Oryza sativa
transcript LOC_Os03g01750.5
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G052546_T04 (Zea mays), 5'ss of exon 1
TATTGATGGATCGGCTCCCTTATTTGTTCCTCTTTTTGATGTCCATGATGACTAGACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcatt--cccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccag
                                                          ||||| || ||||| ||||||||||||||||| |||||||| |||||||||  |||  ||||| | |       ||| |      ||  |  || | |    || |||   | | ||  ||||    |  |    ||||||  | |  ||||                                                      
----------------------------------------------------------ATGGTCCGCGGCGGCAGTCGCCGATCAAACACCGTCAAAACTgtaagcattagccccccacct-cgtcgtttccgatttcattccgac-aacggaaatcttatcctca---cactgaggataaggtgtccc----gatagaggctg--gcagg-----------------------------------------------------

upper sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 3
TATTGATGGATCGGCTCCCTTATTTGTTCCTCTTTTTGATGTCCATGATGACTAGACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcatt--cccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccag
                                                        ||||||| || ||||| ||||||||||||||||| |||||||| |||||||||  |||  ||||| | |       ||| |      ||  |  || | |    || |||   | | ||  ||||    |  |    ||||||  | |  ||||                                                      
-------------------------------------------------------GCGATGGTCCGCGGCGGCAGTCGCCGATCAAACACCGTCAAAACTgtaagcattagccccccacct-cgtcgtttccgatttcattccgac-aacggaaatcttatcctca---cactgaggataaggtgtccc----gatagaggctg--gcagg-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678199|gb|CB674474.1|CB674474
EST:     ACTAGACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC                         GCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
genomic: ACTAGACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattc ... aacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC