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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGgtccgcctcccatggctactgcctgtactactacactacactacatctctctttctttctttttcagtttccttcccttctcaattagattaattaattaattaattaattacttgtgctactgcctgctaatgatggaaaacgcatag

Basic information

species Oryza sativa
transcript LOC_Os03g01150.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01150.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G374779_T04 (Zea mays), 5'ss of exon 2
GGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGgtccgcctcccatggctactgcctgtactactacactacactacatctctctttctttctttttcagtttccttcccttctcaattagattaattaattaattaattaattacttgtgctactgcctgctaatgatggaaaacgcatag
|||| || |||||||||| ||||||||| || |||||||||||    ||||||||||| ||||||| |||| | ||||||||||||||||     ||| ||   | ||  || |  |  | ||  | |    ||    ||  |       ||  |  |||| |  | ||| | ||| ||||    || |                     
GGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgccaactccatctcctca-tcctcatcccgttacctggccgctctgattgccgccatccttgctctatta-tggaataactgctt-tgctttccccag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88400076|gb|CI588380.1|CI588380
EST:     CAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTG                         TGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACA
genomic: CAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGgtccgcctcc ... aaacgcatagTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACA