1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacaggacaag
species | Oryza sativa |
transcript | LOC_Os02g58730.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|86900291|gb|CI296334.1|CI296334
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|3763167|gb|AU029919.1|AU029919
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGGACAAGEST: gi|88718274|gb|CI741363.1|CI741363
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGAT--A-CA-G-C-AGgttctacttt ... acagg
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88718274|gb|CI741363.1|CI741363
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|33802327|gb|CF327037.1|CF327037
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|33802327|gb|CF327037.1|CF327037
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88314827|gb|CI608286.1|CI608286
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88314827|gb|CI608286.1|CI608286
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|163919913|gb|EG714915.1|EG714915
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|163919913|gb|EG714915.1|EG714915
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|58593555|gb|CF991863.1|CF991863
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGGACAAGEST: gi|88406286|gb|CI596413.1|CI596413
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGAT--A-CA-G-C-AGgttctacttt ... acagg
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88406286|gb|CI596413.1|CI596413
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|58594206|gb|CF992514.1|CF992514
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGGGGGATACAGCAGGACAAGEST: gi|88410858|gb|CI578664.1|CI578664
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGAT--A-CA-G-C-AGgttctacttt ... acagg
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGAAG AGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATGTTTTCCEST: gi|88725691|gb|CI748950.1|CI748950
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaagAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATGTTTTCC
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88725691|gb|CI748950.1|CI748950
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218494722|gb|FG969779.1|FG969779
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218494722|gb|FG969779.1|FG969779
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|163920990|gb|EG710403.1|EG710403
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|163920990|gb|EG710403.1|EG710403
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|14980894|gb|BI305572.1|BI305572
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGGACAAGEST: gi|117226289|gb|CT846197.1|CT846197
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGAT--A-CA-G-C-AGgttctacttt ... acagg
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|117226289|gb|CT846197.1|CT846197
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88693672|gb|CI737247.1|CI737247
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88693672|gb|CI737247.1|CI737247
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88368345|gb|CI577616.1|CI577616
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88368345|gb|CI577616.1|CI577616
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88406839|gb|CI578367.1|CI578367
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88406839|gb|CI578367.1|CI578367
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88362335|gb|CI608726.1|CI608726
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88362335|gb|CI608726.1|CI608726
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88363065|gb|CI616222.1|CI616222
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|88363065|gb|CI616222.1|CI616222
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218499440|gb|FG950955.1|FG950955
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218499440|gb|FG950955.1|FG950955
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218483315|gb|FG958115.1|FG958115
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218483315|gb|FG958115.1|FG958115
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218501655|gb|FG956603.1|FG956603
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|218501655|gb|FG956603.1|FG956603
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG GEST: gi|30228239|gb|CB966130.1|CB966130
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... acaggacaag-
EST: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGGACAAG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGAT--A-CA-G-C-AGgttctacttt ... acagg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacaggacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA