Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacag

Basic information

species Oryza sativa
transcript LOC_Os02g58730.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58730.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G375002_T03 (Zea mays), 5'ss of exon 2
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacag
||||||||||||||||| || || ||||||||||| ||||||||||| || ||||||||||| ||||||||  |||||||||||||||||      ||||| |    ||||   || | |   |  | || |    || | | |    | ||  ||    | | ||| | | | ||  |  | |||   ||
GACTATGTTCCAACTGTGTTCGACAACTTCAGTGCCAATGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtct---cttcccttggcattaa--aatccttctttgtatctgc----attccttcctgctccaaagt----acagtaactgata-ttctatgatttttttag

upper sequence: LOC_Os02g58730.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT4G35020.3 (Arabidopsis thaliana), 5'ss of exon 4
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctc-cttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacag
|| ||||| |||||||| || ||||| |||||||| |||||  | || ||||| | |||| | |||||||| ||||||||||| |||||       || || |   |||  | |     ||  |   |  | |||  | | |  ||  | |     | |       ||| |                     
GATTATGTGCCAACTGTGTTCGATAATTTCAGTGCCAATGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgttaccttggatttttttgtcttttgaatttcctcctcttccagagagtcatttgtgtttttgacttggtgaaacag--------------------

upper sequence: LOC_Os02g58730.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S51_114V6.1 (Physcomitrella patens), 5'ss of exon 2
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatg-cgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacag
|| || ||||| || || ||||| |||||||| |||||||| ||||||||||| |  || || ||| | ||||| |||||||||||||||   |  |       |    |     |   |  |||  |  ||           | | |     || |  |    ||   ||    ||   | |||  ||   
GATTACGTTCCTACCGTGTTTGACAACTTCAGCGCAAATGTAGTGGTCGATGGAAATACCGTCAACCTCGGGTTATGGGATACAGCAGgtgagagatgatttgacgccaagctcttctctatcgttcatatctactcgagttccaatcgacagcgctggtattgatgcgtagtgcttc--cgaatggaaa--

upper sequence: LOC_Os02g58730.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S165_55V6.1 (Physcomitrella patens), 5'ss of exon 2
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaa--atttaacag
|| || ||||| || ||||||||||||||||| || ||||| || |||||||| | |||||| ||| | ||  | |||||||||||||||   |  |  |     ||    |   |    || |    |  || || |||   |   ||  | || ||     ||    |   |     |||  ||| ||   
GATTACGTTCCTACCGTTTTTGATAACTTCAGCGCGAATGTCGTTGTCGATGGAAACACTGTAAACCTTGGACTATGGGATACAGCAGgtaagagataacttaagttggtgttcttttg-gcatttcgcagctgat-tactagcgttttgtatgg-caagggcatccgcagtgaccgaccaataattcaat--

upper sequence: LOC_Os02g58730.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ11645 (Selaginella moellendorffii), 5'ss of exon 2
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacag
|| || ||||| |||||||||||||||||||| || ||||| || |||||||| | |||||| ||| | ||| | ||||| || || |||||  |           | |  | |||    |  | || |    | |  |  ||   ||    || |||   |                             
GATTACGTTCCCACTGTTTTTGATAACTTCAGCGCCAATGTGGTTGTCGATGGCAACACTGTCAACCTTGGGCTCTGGGACACTGCTGgttcgtcaaaaaaaaatctgtgtttgatttgaggatgaatcaatctct-catctctggctgcttcg-tcacgcag----------------------------

upper sequence: LOC_Os02g58730.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ04304 (Selaginella moellendorffii), 5'ss of exon 2
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacag
||||| || || || || ||||||||||| ||||| |||||||| || ||||| | ||||||||| |||||  | ||||| || || ||   ||| ||   ||      | | |  || ||    |||   |  |   |      | |||          |||      |                     
GACTACGTGCCTACAGTCTTTGATAACTTTAGTGCCAATGTTGTCGTGGATGGCAACACTGTGAATTTGGGTCTCTGGGACACCGCTGg---tacgtttagctggaaaaactcg--gcttgttctaacg--caaacgcatgcttgctttttgtttctcgtaaatctcgcag--------------------

upper sequence: LOC_Os02g58730.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ09765 (Selaginella moellendorffii), 5'ss of exon 2
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctt-tcacggtcatcaaaataaataaaaatttgacaaatttaacag
|| || ||||| |||||||||||||||||||| || ||||| || |||||||| | |||||| ||| | ||| | ||||| || || |||||  |           | |  | || | |||  | || ||| | || |    |  | |  |||||                                     
GATTACGTTCCCACTGTTTTTGATAACTTCAGCGCCAATGTGGTTGTCGATGGCAACACTGTCAACCTTGGGCTCTGGGACACTGCTGgttcgtcaaaaaaaaatctgtgtttga-ggatgaatcaatctc-tcatctctggctgcttcgtcacgcag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88725691|gb|CI748950.1|CI748950
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTANGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|218483315|gb|FG958115.1|FG958115
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88362335|gb|CI608726.1|CI608726
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|163919913|gb|EG714915.1|EG714915
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|30228239|gb|CB966130.1|CB966130
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|58593555|gb|CF991863.1|CF991863
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88406286|gb|CI596413.1|CI596413
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|325493533|gb|JG458057.1|JG458057
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGG-ATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88314827|gb|CI608286.1|CI608286
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|86900291|gb|CI296334.1|CI296334
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88410858|gb|CI578664.1|CI578664
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAG-A-                         -A---GAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88368345|gb|CI577616.1|CI577616
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|30229558|gb|CB967449.1|CB967449
EST:     GATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: GATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|218501655|gb|FG956603.1|FG956603
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88337442|gb|CI630739.1|CI630739
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|4714260|gb|AU058227.1|AU058227
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|117226289|gb|CT846197.1|CT846197
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|32947879|gb|BP184451.1|BP184451
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|163920990|gb|EG710403.1|EG710403
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|33802327|gb|CF327037.1|CF327037
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|218499440|gb|FG950955.1|FG950955
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|218494722|gb|FG969779.1|FG969779
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88406839|gb|CI578367.1|CI578367
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|25802725|gb|CA758686.1|CA758686
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88363065|gb|CI616222.1|CI616222
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|58591734|gb|CF990042.1|CF990042
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88693672|gb|CI737247.1|CI737247
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|88718274|gb|CI741363.1|CI741363
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGC
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGC
EST: gi|3763167|gb|AU029919.1|AU029919
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|14980894|gb|BI305572.1|BI305572
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|58594206|gb|CF992514.1|CF992514
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGGGGGATACAGCAG                         GACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATG
EST: gi|7134824|gb|AU082692.1|AU082692
EST:     TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAG                         GACAAGAGGACTACAATA-GCTACGCCCCGTTGAGCTATCGTGGCGCTGAT
genomic: TGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACG-CCCGTTGAGCTATCGTGGCGCTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 38

GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctacttt ... aatttaacagGACAAGAGGACTACAATAGGCTACGCCCGTTGAGCTATCGTGGCGCTGATGTTTTCCTGCTGGCCTTTTCTCTGATCAGCAAAGCAAGCTATGAGAATGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTATGTTCCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGgttctactttcccctccttttaatggatgcatgcgtaaacctccttatatacatccacctttcacggtcatcaaaataaataaaaatttgacaaatttaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA