1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGGATCCGCGCCCCCTGGCTGTCACCGTAATCTTTCAGGGTTTTCGCGAGGATGTCGTGGTGCACGATTGAGTCTGATCCCGgtgagttttagtttatatctctttgtctatatcattagttgcatgttgttcatgggaggtttactggatgctagccaatgtattgtgtttattcattagt...
species | Oryza sativa |
transcript | LOC_Os02g57630.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCTGATCCCG GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAGEST: gi|25798730|gb|CA754699.1|CA754699
genomic: GTCTGATCCCGgtgagtttta ... tgacctgtagGTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAG
EST: TTTCAGGGTTTTCGCGAGGATGTCGTGGTGCACGATTGAGTCTGATCCCG GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAGEST: gi|29668412|gb|CB664687.1|CB664687
genomic: TTTCAGGGTTTTCGCGAGGATGTCGTGGTGCACGATTGAGTCTGATCCCGgtgagtttta ... tgacctgtagGTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAG
EST: GTCTGATCCCG GTGTTCTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAGEST: gi|33797877|gb|CF324798.1|CF324798
genomic: GTCTGATCCCGgtgagtttta ... tgacctgtagGTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAG
EST: TTTCAGGGTTTTCGCGAGGATGTCGTGGTGCACGATTGAGTCTGATCCCG GTGTTTTCACCGAATTGATCCATTATATGCAAGTAAAAGGTGTTCAG
genomic: TTTCAGGGTTTTCGCGAGGATGTCGTGGTGCACGATTGAGTCTGATCCCGgtgagtttta ... tgacctgtagGTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGATCCGCGCCCCCTGGCTGTCACCGTAATCTTTCAGGGTTTTCGCGAGGATGTCGTGGTGCACGATTGAGTCTGATCCCGgtgagttttagtttatatctctttgtctatatcattagttgcatgttgttcatgggaggtttactggatgctagccaatgtattgtgtttattcattagt
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG