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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcgagtctgaactgtcactttaagtagctcacagtttcacatattttcaaatcacatcaagttaagtggaatcaagctttgctgcgcacaatac...

Basic information

species Oryza sativa
transcript LOC_Os02g57250.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57250.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G142768_T01 (Zea mays), 5'ss of exon 2
GGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagc--tcgagtctgaactgtcactttaagtagctcacagtttcacatattttca-aatcacatcaagttaagtgg--aatcaagctttgctgcgcacaatac-----------------------------------------------------------------------------------------
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GGAAGGAAGGTCGATCTCAATGCCCATCGCTCTTACAAGACCCTTGCCTCAGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcatatagtctgatcttttactttcacta-tatatatatatatatatatatatagtagaacccagttgcatacttggctatacact-taggacacgacactgtactagatatagtttcataagtctgcgaggatgttttttctgctctcatttctgaacctgatttgtactgatcgtgaaaattatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3760881|gb|C98135.1|C98135
EST:     AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|86535627|gb|CI175833.1|CI175833
EST:     TTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACTAACTCGCTGAAACTACTAGACGACTCTGCCGAATACCAGCTCA
genomic: TTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|89170905|gb|CI040182.1|CI040182
EST:     CTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: CTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|14571418|gb|BI118786.1|BI118786
EST:     AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAAGTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|58688338|gb|CK077025.1|CK077025
EST:     AGCCCTTGAAGTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAAGTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|58683213|gb|CK071900.1|CK071900
EST:     CGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAAGTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: CGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|86510796|gb|CI153429.1|CI153429
EST:     AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|89176834|gb|CI013407.1|CI013407
EST:     TCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGGAAGTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: TCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|55409064|gb|CV721440.1|CV721440
EST:     GTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: GTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|87034650|gb|CI189274.1|CI189274
EST:     GGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGATACTATTAGACAACTCTGCCGAATACCAGCTCA
genomic: GGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|29645716|gb|CB650723.1|CB650723
EST:     AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|89194933|gb|CI003397.1|CI003397
EST:     AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACCACTCTGCCGAATACCAGCTCA
genomic: AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|29685040|gb|CB681315.1|CB681315
EST:     AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: AGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|88979064|gb|CI025572.1|CI025572
EST:     ACGAAGCCGTCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: ACGAAGCCGTCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA
EST: gi|89198698|gb|CI003435.1|CI003435
EST:     TCCATTGGCCTTTGCGCTTCTC                         ATAATACAAACTCGCTGCAACTACTAGACAACTCTGCCGAATACCAGCTCA
genomic: TCCATTGGCCTTTGCGCTTCTCgtaagctcga ... gcattttcagATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCA