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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTACGGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcactgtcctatccccatgtaatttccgctgcaataccaccatctgtccaagttgatagataggcactagtagttccatctgagcaggcagtatt...

Basic information

species Oryza sativa
transcript LOC_Os02g55770.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88451519|gb|CI565572.1|CI565572
EST:     GGATCCGCCTTCAACATCCGCAAGGATCCTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88718299|gb|CI741388.1|CI741388
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88577142|gb|CI673698.1|CI673698
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88355497|gb|CI679216.1|CI679216
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|58596761|gb|CK007289.1|CK007289
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88392100|gb|CI683931.1|CI683931
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88720299|gb|CI743598.1|CI743598
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88580382|gb|CI697306.1|CI697306
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88355496|gb|CI679215.1|CI679215
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88458095|gb|CI695047.1|CI695047
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88301009|gb|CI592189.1|CI592189
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88390036|gb|CI590549.1|CI590549
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88340704|gb|CI647582.1|CI647582
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88742052|gb|CI765560.1|CI765560
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88386481|gb|CI575259.1|CI575259
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88355632|gb|CI628916.1|CI628916
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88417142|gb|CI576216.1|CI576216
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88364543|gb|CI644621.1|CI644621
EST:     GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
EST: gi|88433839|gb|CI584334.1|CI584334
EST:     GGATCCGCCTTCAAAATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAA                         GTT-CAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC
genomic: GGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCAAgtaattcact ... ctgttgccagGTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGC