1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCAAGTCTGCTCAAGCTAGCAGCGCGGCTATTGTTTTTGCTTCAGTGGGTGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAGgtagtgtgatcttgatgctcctttcatggaattgttgtgatcttgtgggatgcattggcttgatgctgaattttatctgtatctggattgcag
species | Oryza sativa |
transcript | LOC_Os02g55140.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAG GAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGAEST: gi|8856196|gb|AU093514.1|AU093514
genomic: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAGgtagtgtgat ... tggattgcagGAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGA
EST: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCA-CAATTGCTTCAG GAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGAEST: gi|87005397|gb|CI285619.1|CI285619
genomic: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAGgtagtgtgat ... tggattgcagGAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGA
EST: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAG GAACTGTGCTTGGGEST: gi|29623639|gb|CB628650.1|CB628650
genomic: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAGgtagtgtgat ... tggattgcagGAACTGTGCTTGGG
EST: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAG GAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGAEST: gi|29663047|gb|CB659322.1|CB659322
genomic: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAGgtagtgtgat ... tggattgcagGAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGA
EST: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAG GAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGA
genomic: TGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAGgtagtgtgat ... tggattgcagGAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAGTCTGCTCAAGCTAGCAGCGCGGCTATTGTTTTTGCTTCAGTGGGTGGGATCCAGGAAGATTTTAAGCTGACTGCTGCGGCAGCAATTGCTTCAGgtagtgtgatcttgatgctcctttcatggaattgttgtgatcttgtgggatgcattggcttgatgctgaattttatctgtatctggattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC