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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCCTGGATGGGGCTCGAAGGCGAGACGCAGCTGTCCATGTCCATCCCCATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagagtactaaccttcgtctccactgatcagaaccgtttcttgattcttatggcgagccgtgctgacgatgatccaacttgcttcctgtttggtcttgtgcaatctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g53690.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53690.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G105335_T02 (Zea mays), 5'ss of exon 2
------GGCTCCTGGATGGGGCTCGAAGGCGAGACGCAGCTGTCCATGTCCATCCCCATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagagtactaaccttcgtctccactgatcagaaccgtt-tcttgattcttatggcgagc----cgtgctgacgatgatccaacttgcttcctgt---ttggtcttgtgcaatctgcag
      || || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||      |  ||||||||||| ||  || |||| | |  ||||   | |     | |  | | | |    |||  || |||  | |||||   |    ||  ||     | ||||||| |  ||   ||   |||  ||  | | ||||||||
AAGGCCGGGTCGTGGATGGGGCTCGACGGCGAGACGCAGCTCTCCATGTCCATCCCCATGGCCGCCACCGACCTCCC------CGTCACCTCCCGCTTCCGTAACGgtgggcactgtac-gtcttgttcgttcgttaacctg--ttgttacctcgatcgtcatggctgactagacggtctcgttctcatccaacgtttttttcgtgacttgtgctgttacgatctgcag

upper sequence: LOC_Os02g53690.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G105335_T01 (Zea mays), 5'ss of exon 2
GGCTCCTGGATGGGGCTCGAAGGCGAGACGCAGCTGTCCATGTCCATCCCCATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagagtactaaccttcgtctccactgatcagaaccgtt-tcttgattcttatggcgagc----cgtgctgacgatgatccaacttgcttcctgt---ttggtcttgtgcaatctgcag
   || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||      |  ||||||||||| ||  || |||| | |  ||||   | |     | |  | | | |    |||  || |||  | |||||   |    ||  ||     | ||||||| |  ||   ||   |||  ||  | | ||||||||
---TCGTGGATGGGGCTCGACGGCGAGACGCAGCTCTCCATGTCCATCCCCATGGCCGCCACCGACCTCCC------CGTCACCTCCCGCTTCCGTAACGGTGGGCACTgtac-gtcttgttcgttcgttaacctg--ttgttacctcgatcgtcatggctgactagacggtctcgttctcatccaacgtttttttcgtgacttgtgctgttacgatctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498911|gb|CI141544.1|CI141544
EST:     CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG                         ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: gi|86501126|gb|CI143759.1|CI143759
EST:     CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG                         ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: gi|87040862|gb|CI195484.1|CI195484
EST:     CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG                         ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: gi|88359107|gb|CI679624.1|CI679624
EST:     CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG                         ATGATTAATCTCTTGAAGAAGTCAAGAAGTGATCAACACGCGGAAGAAATC
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: gi|58669719|gb|CK058405.1|CK058405
EST:     CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG                         ATGAATAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: gi|87010015|gb|CI277516.1|CI277516
EST:     CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG                         ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC