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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCATCTTGAGGAATTCTGTCAAGGACAAGAGAAAGGTCTTTGAGGTGTCAGGCAGGCAACAATTCAGAGCCGAGGGCTCCTATTCTTTCTTGTTTCAGgtatattgtgcatttcaatcatgtctcatgctttgcatctgcgctaatttcagcataaggaatgaatgctcatttgcaaatttcctgttgtctag

Basic information

species Oryza sativa
transcript LOC_Os02g53380.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53380.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G843892_T01 (Zea mays), 5'ss of exon 2
TTGCATCTTGAGGAATTCTGTCAAGGACAAGAGAAAGGTCTTTGAGGTGTCAGGCAGGCAACAATTCAGAGCCGAGGGCTCCTATTCTTTCTTGTTTCAGgtatat-tgtgcatttcaatcatg-tctcatg--ctttgcatctgcgctaatttcagcataaggaatgaatgctcatt-tgcaaatttcctgttgtctag---
||| |||||||||||||||||||| |||||||| ||||| |||||||| || ||||||   |||||||| || ||||||||||| ||||||||||| |||||| ||  || |   | | ||  | | |  |   || ||  |||  |||| ||||  ||    |||   |  || |    || ||  | ||||||  |     
TTGTATCTTGAGGAATTCTGTCAAAGACAAGAGTAAGGTTTTTGAGGTATCCGGCAGGAGCCAATTCAGGGCTGAGGGCTCCTACTCTTTCTTGTTCCAGgtagatacgtacgccttattccagcttttgtcatctctggctctatgctagtttcctcaactagaacagactcttaaagcgcgaacatgctgttgctttatag

upper sequence: LOC_Os02g53380.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G165961_T01 (Zea mays), 5'ss of exon 2
TTGCATCTTGAGGAATTCTGTCAAGGACAAGAGAAAGGTCTTTGAGGTGTCAGGCAGGCAACAATTCAGAGCCGAGGGCTCCTATTCTTTCTTGTTTCAGgtatat----tgtgcatttcaatcatgtctc----atgctttgcat-ctgcgctaatttcagcataaggaatgaatgctcatttgcaaatttcctgttgtctag---
||| || |||||||||||||| || |||||||| ||||| |||||||| || || |||   |||||||| || ||||||||||| ||||||||||| |||||| ||      |   ||| | | || | |     ||   | || | ||  |||| ||||| ||    |||  ||  || |    ||||  | ||||||| |     
TTGTATATTGAGGAATTCTGTTAAAGACAAGAGTAAGGTTTTTGAGGTATCCGGTAGGAGCCAATTCAGGGCTGAGGGCTCCTACTCTTTCTTGTTCCAGgtagatatgccttcttttttatttattttttggctatctctggctttctttgctagtttcatcaactagaacaaactcttacgcacaaacatgctgttgtttcatag