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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAACTCGGTGATCACCACGCCGGGACACGATGAGGTGCTCCCCATCAATGCGCTGACGACGCAGCGGCCGTATACGATGAAGGGATACGCCTACTCCGgtaagccccaagcccatctcatctatcatgttgtttgtttttgggcttcggcctgctcgttctaaaagcccaccatgatcactttatgcttttactgggccgttataatatcagtatctttgtactgatggtgaatgggtgattaacggtgatgattttctgttgccag

Basic information

species Oryza sativa
transcript LOC_Os02g53130.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53130.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G428027_T01 (Zea mays), 5'ss of exon 2
ATAAACTCGGTGATCACCACGCCGGGACACGATGAGGTGCTCCCCATCAATGCGCTGACGACGCAGCGGCCGTATACGATGAAGGGATACGCCTACTCCGgtaagccccaagcccatctcatc-tatcatgttgtttgtttttgggcttcggcctgctcgttctaaaagcccaccatgatcactttatgcttttactgggccgttataatatcagtatctttgtactgatggtgaatgggtgattaacggtgatgattttctgttgccag
|| ||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||||||| ||    |  || |   |     ||   ||  |    | |||   | | | |  | ||           |      |||  ||  |     |||  |    |                                                                  
ATCAACTCGGTGATCACCACGCCGGGACACGACGAGGTGCTGCCCATCAACGCCCTGACGACGCAGCGGCCGTATACGATCAAGGGATATGCATACTCCGgtgagtgtgagtccaacaacgcagcatttcgtcatcccatcttgcattgccgacgacgcgccgcgctgcttcgtgtgaatcttttcgta----tacgcgtatat------------------------------------------------------------------

upper sequence: LOC_Os02g53130.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G878558_T01 (Zea mays), 5'ss of exon 2
ATAAACTCGGTGATCACCACGCCGGGACACGATGAGGTGCTCCCCATCAATGCGCTGACGACGCAGCGGCCGTATACGATGAAGGGATACGCCTACTCCGgtaagccccaagcccatctcatctatcatgttgtttgtttttgggcttcggcctgctcgttctaaaagcccaccatgatcactttatgcttttactgggccgttataatatcagtatctttgtactgatggtgaatgggtgattaacggtgatgattttctgttgccag
|| ||||||||||||||||| || |||||||| |||||||| |||||||| || || ||||||||||||||||||||||| || |||||||| ||||||||| ||     || ||| |  |   | |||    ||  |  |      | |   |||     | |    |||   ||  | | |    |        | ||  |   |||                                                            
ATCAACTCGGTGATCACCACACCAGGACACGACGAGGTGCTGCCCATCAACGCCCTCACGACGCAGCGGCCGTATACGATCAAAGGATACGCATACTCCGgtgag---tgagtccaaca-acgcagcat----ttcatcatcccatcttgcattgcatcacccacgccccctggatc-tgagtcggagtcaaggaagagcgatccgaat------------------------------------------------------------